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Protocols

OpenFMRI specifications

Information


Unique identifier OMICS_16883
Name OpenFMRI
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Allowed
Content license Other
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/OpenfMRI

Maintainer


  • person_outline Russell Poldrack

Publications for OpenFMRI

OpenFMRI citations

 (23)
library_books

A Neuroimaging Web Services Interface as a Cyber Physical System for Medical Imaging and Data Management in Brain Research: Design Study

2018
PMCID: 5945984
PMID: 29699962
DOI: 10.2196/medinform.9063

[…] es with more specialized audiences exist and have been cataloged in Neuroscience Information Framework []. These include the Minimal Interval Resonance Imaging in Alzheimer's Disease database [], the OpenfMRI database [], NeuroVault [], The Virtual Brain [], Neuroimaging Data Model [], the Vanderbilt University Institute for Imaging Science Center for Computational Imaging XNAT (Extensible Neuroim […]

library_books

Potential Reporting Bias in Neuroimaging Studies of Sex Differences

2018
Sci Rep
PMCID: 5904173
PMID: 29666377
DOI: 10.1038/s41598-018-23976-1

[…] cant results. Conversely, solutions to this problem may involve pre-registered protocols and registration databases, openness and transparency with wider data sharing practices such as Neurovault and OpenfMRI, as well as pre-registered reports and other efforts that try to minimize selective reporting,. […]

library_books

Three Research Strategies of Neuroscience and the Future of Legal Imaging Evidence

2018
Front Neurosci
PMCID: 5837991
PMID: 29545740
DOI: 10.3389/fnins.2018.00120

[…] d by the information processing capacity. Recently, studies in neuroscience established brain–function databases, such as BrainMap (Laird et al., ), Brede (Nielsen et al., ), SuMS (Dickson et al., ), OpenfMRI (Poldrack, ), NeuroVault (Gorgolewski et al., ). All these are automated platforms for data collection, storage, and analysis. For example, Neurosynth (http://www.neurosynth.org) uses data mi […]

library_books

Value generalization in human avoidance learning

2018
eLife
PMCID: 5957527
PMID: 29735014
DOI: 10.7554/eLife.34779.028

[…] ration, data collection, and data analysis, in addition to raw behavioural data, are available at the project’s Open Science Framework page (osf.io/25t3f). Raw functional imaging data is deposited at openfMRI (openfmri.org/dataset/ds000249) and derived statistical maps are available at NeuroVault (neurovault.org/collections/3177). […]

library_books

Consensus clustering approach to group brain connectivity matrices

2017
PMCID: 5846804
PMID: 29601048
DOI: 10.1162/NETN_a_00017

[…] ndividual scanning sessions and also related to significant alterations in global efficiency of brain connectivity as well as differences in self-reported attention. These data were obtained from the OpenfMRI database. Its accession number is ds000031. The functional MRI (fMRI) data were preprocessed with FSL (FMRIB Software Library v5.0). The first 10 volumes were discarded for correction of the […]

library_books

The neural representation of personally familiar and unfamiliar faces in the distributed system for face perception

2017
Sci Rep
PMCID: 5612994
PMID: 28947835
DOI: 10.1038/s41598-017-12559-1

[…] All preprocessing steps were run using a Nipype workflow (version 0.11.0; FSL version 5.0.9),, which also used functions from SciPy and NumPy. We modified the preprocessing pipeline fmri_ants_openfmri.py and adapted it for our analyses. The modified version is available at https://www.github.com/mvdoc/famface. All the preprocessing analyses were run on a computing cluster running Debian Je […]

Citations

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OpenFMRI institution(s)
Department of Psychology, Stanford University, Stanford CA, USA
OpenFMRI funding source(s)
Supported by NSF Grant #OCI-1131441, NIDA Grant #R21DA034316, and the Laura and John Arnold Foundation.

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