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|Restrictions to use||None|
|Database management system||PostgreSQL|
|User data submission||Not allowed|
Publication for openSputnik
EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration
[…] eristics we consider essential for the research community (Table ). First, they must be freely available for download and local installation, as is the case for EST2uni. Some other tools (ParPEST , openSputnik , PipeOnline ), although promising, are not available for free download and local installation, and they must be used in collaboration with their maintainers under specific agreements. […]
A wing expressed sequence tag resource for Bicyclus anynana butterflies, an evo devo model
[…] The cluster consensus nucleotide sequences and predicted peptide sequences were assigned likely identities within the openSputnik  pipeline using BLASTN (fields ending in ".nuc" in Table ) and BLASTX (fields ending in ".pro" in Table ) . Sequence comparisons between B. anynana and other insect sequence collection […]
Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert
[…] LASTN and BLASTX algorithms against a non-redundant protein sequence database, the Swissprot database, the A. thaliana and O. sativa genome databases, and sequence databases containing the aggregated openSputnik consensus sequences for Asterid, Eurosid, Caryophyllid, and monocot genomes. Sequences were additionally functionally characterized in context with the MIPS Funcat and Gene Ontology GO ter […]
Éclair—a web service for unravelling species origin of sequences sampled from mixed host interfaces
[…] ed within the Éclair system so no new model needs to be produced. The user uploads the sequences to the Éclair server along with information on the species these sequences should be classified to. An openSputnik project is created and the sequences are imported. From each EST sequence, a CDS is predicted through the ESTScan application () using each of the species-specific ESTScan models. The resu […]
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