OpEx specifications


Unique identifier OMICS_17713
Name OpEx
Alternative name Optimised Exome
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A files provided by paired-end Illumina sequencing.
Input format FASTQ
Output data A read alignments, quality control metrics and annotated variant calls.
Operating system Unix/Linux
Programming languages Java, Python
License MIT License
Computer skills Advanced
Version 1.0.0
Stability Stable
Requirements Numpy
Maintained Yes



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Publication for Optimised Exome

OpEx institution(s)
The Institute of Cancer Research, London, Division of Genetics & Epidemiology, Sutton, UK; Wellcome Trust Centre for Human Genetics, Roosevelt Drive, Oxford, UK; Royal Marsden NHS Foundation Trust, Cancer Genetics Unit, Sutton, UK
OpEx funding source(s)
This study was funded by Wellcome Trust (Grant reference: 200990/Z/16/Z) and the Institute of Cancer Research, London.

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