Allows users to explore the protein-membrane systems of the Orientations of Proteins in Membranes (OPM) built and equilibrated using High-Throughput Molecular Dynamics (HTMD). OPM-DB simulates the dataset in both CHARMM and AMBER force fields. It permits users to view trajectories, Root-Mean-Square-Deviation (RMSD) plots as well as download the final equilibrated structures for further simulation. The repository is part of the PlayMolecule platform.
Computational Biophysics Laboratory (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB), Barcelona, Spain; Institute of Neurosciences, National Research Council of Italy (IN-CNR), Padua, Italy; Acellera, Barcelona Biomedical Research Park (PRBB), Barcelona, Spain; Institució Catalana de Recerca i Estudis Avancats (ICREA), Barcelona, Spain
OPM DB funding source(s)
Supported by Acellera Ltd, MINECO (BIO2014-53095-P) and FEDER.