oPOSSUM pipeline

oPOSSUM specifications

Information


Unique identifier OMICS_00488
Name oPOSSUM
Alternative name oPOSSUM-3
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 3.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainers


  • person_outline Wyeth Wasserman <>
  • person_outline pPOSSUM Team <>

Additional information


http://opossum.cisreg.ca/oPOSSUM3/help.html

Information


Unique identifier OMICS_00488
Name oPOSSUM
Alternative name oPOSSUM-3
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Version 3.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

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Maintainers


  • person_outline Wyeth Wasserman <>
  • person_outline pPOSSUM Team <>

Additional information


http://opossum.cisreg.ca/oPOSSUM3/help.html

Publications for oPOSSUM

oPOSSUM IN pipeline

2013
PMCID: 3781334
PMID: 24069029
DOI: 10.3389/fgene.2013.00188

[…] data represent go biological process annotations with a decorrelated enrichment computation and a 5% false discovery rate correction. transcription factor binding site analysis was performed using opossum software (ho sui et al., 2005). data represent a single site analysis of vertebrate transcription factor binding sites within 2000 base pairs upstream or downstream of the transcription start […]

oPOSSUM institution(s)
Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, University of British Columbia, Vancouver, BC, Canada; Department of Medical Genetics, Genetics Graduate Program, and Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC, Canada
oPOSSUM funding source(s)
Supported by funding from the National Institutes of Health (USA) grant 1R01GM084875, the Canadian Institutes for Health Research, the National Science and Engineering Research Council (NSERC), GenomeBC (CanEuCre Project), and Genome Canada (Pleiades Promoter Project), a NSERC fellowship, and a fellowship from the Canadian Institutes of Health Research and the Michael Smith Foundation for Health Research.

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