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OptCom

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Provides a comprehensive flux balance analysis framework for microbial communities. OptCom relies on a multi-level and multi-objective optimization formulation to properly describe trade-offs between individual vs. community level fitness criteria. This modeling framework is general enough to capture any type of interactions (positive, negative or combination of both) for any number of species (or guilds) involved. In addition, OptCom is able to explain in vivo observations in terms of the levels of optimality of growth for each participant of the community.

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OptCom versioning

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OptCom classification

OptCom specifications

Software type:
Framework/Library
Restrictions to use:
Academic or non-commercial use
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

OptCom support

Maintainer

  • Costas Maranas <>

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Credits

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Publications

Institution(s)

Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA

Funding source(s)

This work was supported by the DOE grant DE-FG02-05ER25684.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.