OMACC specifications

Unique identifier:
OMICS_10944
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
SOMA
Name:
Optical-Map-Assisted Contig Connector
Interface:
Command line interface
Input data:
OMACC takes as input contig sequences in FASTA format and a contig graph in Newbler format ("454ContigGraph.txt"). OMACC also offers a script to convert the optical map file generated by OpGen, currently the most popular optical mapping platform, into the required format.
Programming languages:
Perl
Maintained:
Yes

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OMACC support

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Publications

Institution(s)

Institute of Biotechnology, National Cheng Kung University, Tainan, Taiwan; Department of Engineering Science, National Cheng Kung University, Tainan, Taiwan; Supercomputing Research Center, National Cheng Kung University, Tainan, Taiwan; Institute of Bioinformatics and Biosignal Transduction, National Cheng Kung University, Tainan, Taiwan

Funding source(s)

This work is supported by National Science Council, Taiwan (NSC 102-2627-B-006-003 and NSC 103-2911-I-006-301).

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