A comprehensive data collection for maize. Optimas-DW integrates data from different data domains such as transcriptomics, metabolomics, ionomics, proteomics and phenomics. A web interface allows users to browse through all stored experiment data in OPTIMAS-DW including all data domains. Furthermore, the user can filter the data to extract information of particular interest. All data can be exported into different file formats for further data analysis and visualisation. The data analysis integrates data from different data domains and enables the user to find answers to different systems biology questions. Finally, maize specific pathway information is provided.

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Optimas-DW classification

  • Plants

Optimas-DW specifications

Restrictions to use:
None
Data access:
File download, Web user interface
Community driven:
No
User data submission:
Not allowed

Publications

  • (Colmsee et al. 2012) OPTIMAS-DW: a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize. BMC Plant Biol.
    PMID: 23272737

Optimas-DW support

Maintainer

Credits

Institution(s)

Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany; Department of Biology, Friedrich-Alexander University of Erlangen-Nuremberg, Erlangen, Germany; University of Cologne, Botanical Institute, Koln, Germany; Plant Biochemistry, Heinrich-Heine-University, Düsseldorf, Germany; International Graduate Program for Plant Science, Heinrich Heine University Dusseldorf, Germany; Cell Biology and Plant Biochemistry, University of Regensburg, Regensburg, Germany; Department of Molecular Physiology, Max Planck Institute of Molecular Plant Physiology, Am Muhlenberg, Germany; Metanomics GmbH, Berlin, Germany; Martin Luther University Halle-Wittenberg, Institute of Computer Science, Halle, Germany

Funding source(s)

This work was supported by the German Federal Ministry of Education and Research in the frame of OPTIMAS [FKZ 0315430A-G].

Link to literature

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