OptiType specifications

Information


Unique identifier OMICS_05461
Name OptiType
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License BSD 2-clause “Simplified” License
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline András Szolek <>

OptiType article

OptiType citation

2018
PMCID: 5834292

[…] variant depth of ≥4, (iv) variant frequency in tumor of ≥10%, (v) variant frequency in normal of <2%, and (vi) fisher p value of <0.05. hla class i genotypes of the tumor were determined by optitype algorithm using whole-exome sequence data of normal dnas [45]. potential neoantigens were predicted for each non-synonymous mutation by testing all 8- to 11-mer peptides harboring the amino […]

OptiType institution(s)
Applied Bioinformatics, Center for Bioinformatics, Quantitative Biology Center, and Department of Computer Science, University of Tübingen, Institute of Medical Genetics and Applied Genomics, University of Tübingen, and CeGaT GmbH, Tübingen, Germany

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