OPTricluster specifications

Information


Unique identifier OMICS_17753
Name OPTricluster
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

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Publication for OPTricluster

OPTricluster in publications

 (3)
PMCID: 5356398
PMID: 28302069
DOI: 10.1186/s12859-017-1596-x

[…] of a subset of genes diverges from the rest of genes. each bifurcation event is associated with a set of tfs that selectively regulate these events., the order preserving triclustering algorithm (optricluster) [] was used to model the three dimensional features in the dataset. for example, in the dataset gse23889, the three dimensions are g × s × t, where g = {g 1, g 2, …, g n } is the set […]

PMCID: 4624643
PMID: 26510531
DOI: 10.1186/s40246-015-0050-2

[…] graphical widgets called probabilistic time boxes. the analysis is fully interactive, and the graphical display shows the time courses along with the graphical query. in java, pests [] and optricluster [] both of which are stand-alone with a gui interface are useful for the clustering of short time-series data in matlab. dynamitec is a dynamic modeling and clustering algorithm […]

PMCID: 4480927
PMID: 26108437
DOI: 10.1186/s12859-015-0635-8

[…] to retrieve groups of genes that have similar expression profiles over a subset of samples during a subset of time points []. in a recent work, tchagang et al. proposed a triclustering algorithm (optricluster) for mining short time series gene expression datasets. optricluster effectively mines time series gene expression data having approximately 3-8 time points and 2-5 samples. according […]


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OPTricluster institution(s)
Knowledge Discovery Group, Institute for Information Technology, National Research Council Canada, Ottawa, ON, Canada; Seed Systems Group, Plant Biotechnology Institute, Saskatoon, SK, Canada; Oil Crops Research, Institute, Chinese Academy of Agricultural Sciences, Wuhan, Hubei, China
OPTricluster funding source(s)
This work was supported by Genomics and Health Initiative, Institute for Information Technology, and Plant Biotechnology Institute of the National Research Council Canada.

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