OptStrain pipeline

OptStrain specifications


Unique identifier OMICS_06453
Name OptStrain
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for OptStrain

OptStrain IN pipeline

PMCID: 3444828
PMID: 22997515
DOI: 10.1155/2012/323472

[…] database that allows for a specified level of biomass production in the resulting model. metaflux [9] is an automated approach to find missing reactions, exchange reactions, and biomass metabolites. optstrain [10] determines the maximum possible yield of a desired product based on the inclusion of all reactions in a universal database and then finds the minimum number of reactions […]

OptStrain institution(s)
Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA

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