Oqtans specifications
Information
| Unique identifier | OMICS_01407 |
|---|---|
| Name | Oqtans |
| Alternative name | Online quantitative transcriptome analysis |
| Software type | Pipeline/Workflow |
| Interface | Command line interface |
| Restrictions to use | None |
| Biological technology | Illumina |
| Operating system | Unix/Linux, Mac OS |
| Programming languages | C, C++, Java, MATLAB, Perl, Python, R |
| License | GNU General Public License version 2.0 |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
Versioning
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Maintainers
- person_outline Gunr Rätsch <>
- person_outline Vipin Sreedharan <>
Publication for Online quantitative transcriptome analysis
library_books
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.
2014 Bioinformatics
PMCID: 3998122
PMID: 24413671
DOI: 10.1093/bioinformatics/btt731
Oqtans institution(s)
Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, NY, USA; Machine Learning in Biology Group, Friedrich Miescher Laboratory, Tübingen, Germany; LINA, Combinatorics and Bioinformatics Group, University of Nantes, Nantes, France; Machine Learning/Intelligent Data Analysis Group, Technical University, Berlin, Germany; Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
Oqtans funding source(s)
Supported by Max Planck Society, the German Research Foundation (RA1894/1-1 and RA1894/2-1) and the Memorial SloanKettering Cancer Center (MSKCC).
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