Oqtans statistics
Oqtans specifications
Information
Unique identifier | OMICS_01407 |
---|---|
Name | Oqtans |
Alternative name | Online quantitative transcriptome analysis |
Software type | Pipeline/Workflow |
Interface | Command line interface |
Restrictions to use | None |
Biological technology | Illumina |
Operating system | Unix/Linux, Mac OS |
Programming languages | C, C++, Java, MATLAB, Perl, Python, R |
License | GNU General Public License version 2.0 |
Computer skills | Advanced |
Stability | Stable |
Maintained | Yes |
Versioning
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Maintainers
- person_outline Gunr Rätsch <>
- person_outline Vipin Sreedharan <>
Publication for Online quantitative transcriptome analysis
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.
Oqtans in publications
(2)[…] there have been many bioinformatics saas solutions to perform tasks ranging from short-read alignment (cloudaligner and sparkbwa ), variant calling (halvade and churchill ) and rna-seq analysis (oqtans and falco ). in platform as a service, users are provided with a platform for developing their own software. some paas providers also provide support for automatically scaling the computing […]
Highlights from the ISCB Student Council Symposium 2013
[…] previous tuberculosis loci, and to introduce novel genes and sub-networks underlying ethnic differences in tuberculosis risk., in the last oral presentation, sreedharan et al. [12] presented oqtans: a multifunctional, workbench for rnaseq data analysis. to assist the investigation of the abundance of rna transcripts and their potential differential expression, the workbench enables […]
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