Oqtans specifications


Unique identifier OMICS_01407
Name Oqtans
Alternative name Online quantitative transcriptome analysis
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS
Programming languages C, C++, Java, MATLAB, Perl, Python, R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Gunr Rätsch <>
  • person_outline Vipin Sreedharan <>

Publication for Online quantitative transcriptome analysis

Oqtans institution(s)
Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, NY, USA; Machine Learning in Biology Group, Friedrich Miescher Laboratory, Tübingen, Germany; LINA, Combinatorics and Bioinformatics Group, University of Nantes, Nantes, France; Machine Learning/Intelligent Data Analysis Group, Technical University, Berlin, Germany; Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
Oqtans funding source(s)
Supported by Max Planck Society, the German Research Foundation (RA1894/1-1 and RA1894/2-1) and the Memorial SloanKettering Cancer Center (MSKCC).

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