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|Restrictions to use||None|
|Database management system||MySQL|
|Data access||File download, Browse|
|User data submission||Not allowed|
- person_outline Ming-Che Shih
Publications for Orchidstra
Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system
[…] DNA sequences were downloaded from NCBI Genbank and Orchidstra (http://orchidstra2.abrc.sinica.edu.tw). For the MADS-box genes primers were designed on the C-terminal of the DNA sequences to avoid cross –amplification. Beacon Designer™ (Premier Biosoft […]
A Modified ABCDE Model of Flowering in Orchids Based on Gene Expression Profiling Studies of the Moth Orchid Phalaenopsis aphrodite
[…] o determine the relative level of gene expression, with the expression value of ubiquitin (PATC150470) or actin (PATC135993) (PATC stands for Phalaenopsis aphrodite transcriptomic contigs used in the Orchidstra database, and denotes transcript contigs assembled from next generation sequencing data ), used as internal controls. Relative expression level is determined by delta CT of target gene no […]
Identification and characterization of the microRNA transcriptome of a moth orchid Phalaenopsis aphrodite
[…] erfect matches (alignments have 100 % identity and span the whole length of the query read) were parsed out from the raw BLAST output. The remaining unique reads were then BLASTN searched against the Orchidstra database. Because the protein-coding ESTs in the Orchidstra database were in the orientation of the coding strand and our small RNA sequencing is strand-specific, the unique reads that alig […]
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