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Orchidstra specifications

Information


Unique identifier OMICS_15239
Name Orchidstra
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.0
Maintained Yes

Maintainer


  • person_outline Ming-Che Shih

Publications for Orchidstra

Orchidstra citations

 (3)
library_books

Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system

2017
BMC Evol Biol
PMCID: 5364718
PMID: 28335712
DOI: 10.1186/s12862-017-0938-7

[…] DNA sequences were downloaded from NCBI Genbank and Orchidstra (http://orchidstra2.abrc.sinica.edu.tw). For the MADS-box genes primers were designed on the C-terminal of the DNA sequences to avoid cross –amplification. Beacon Designer™ (Premier Biosoft […]

library_books

A Modified ABCDE Model of Flowering in Orchids Based on Gene Expression Profiling Studies of the Moth Orchid Phalaenopsis aphrodite

2013
PLoS One
PMCID: 3827201
PMID: 24265826
DOI: 10.1371/journal.pone.0080462

[…] o determine the relative level of gene expression, with the expression value of ubiquitin (PATC150470) or actin (PATC135993) (PATC stands for Phalaenopsis aphrodite transcriptomic contigs used in the Orchidstra database, and denotes transcript contigs assembled from next generation sequencing data []), used as internal controls. Relative expression level is determined by delta CT of target gene no […]

library_books

Identification and characterization of the microRNA transcriptome of a moth orchid Phalaenopsis aphrodite

2013
Plant Mol Biol
PMCID: 3920020
PMID: 24173913
DOI: 10.1007/s11103-013-0150-0

[…] erfect matches (alignments have 100 % identity and span the whole length of the query read) were parsed out from the raw BLAST output. The remaining unique reads were then BLASTN searched against the Orchidstra database. Because the protein-coding ESTs in the Orchidstra database were in the orientation of the coding strand and our small RNA sequencing is strand-specific, the unique reads that alig […]


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Orchidstra institution(s)
Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan; Department of Horticulture and Landscape Architecture, National Taiwan University, Taipei, Taiwan
Orchidstra funding source(s)
This work was supported by Academia Sinica [under the Development Program of Industrialization for Agricultural Biotechnology, (grant No. 098S0311)]; the National Science Council.

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