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Open reading frame identification software tools | Shotgun metagenomic sequencing data analysis

Finding and translating stretches of DNA lacking stop codons is a task common in the analysis of sequence data. However the computational tools for finding open reading frames are sufficiently slow that they are becoming a bottleneck as the volume of sequence data grows. This computational bottleneck is especially problematic in metagenomics when searching unassembled reads, or screening assembled contigs for genes of interest.

Source text:
(Woodcroft et al., 2016) OrfM: a fast open reading frame predictor for metagenomic data. Bioinformatics.

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