ORION specifications

Information


Unique identifier OMICS_13451
Name ORION
Alternative name Optimized protein fold RecognitION
Interface Web user interface
Restrictions to use None
Input data ORION accepts a single protein sequence as input and searches homologous protein structures within minutes.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jean-Christophe Gelly

Information


Unique identifier OMICS_13451
Name ORION
Alternative name Optimized protein fold RecognitION
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Jean-Christophe Gelly

Publications for Optimized protein fold RecognitION

ORION citation

library_books

Recent Progress in Machine Learning Based Methods for Protein Fold Recognition

2016
Int J Mol Sci
PMCID: 5187918
PMID: 27999256
DOI: 10.3390/ijms17122118

[…] ading ASSEmbly Refinement), which is an integrated platform for automated protein structure and function prediction based on the sequence-to-structure-to-function paradigm. Ghouzam et al. [] proposed ORION, a new fold recognition method based on pairwise comparison of hybrid profiles that contain evolutionary information from protein sequences and their structures. Other template-based methods wer […]

ORION institution(s)
INSERM, U 1134, DSIMB, Paris, France; Université Paris Diderot, Sorbonne Paris Cité, UMR_S 1134, Paris, France; Institut National de la Transfusion Sanguine (INTS), Paris, France; Laboratoire d’Excellence GR-Ex, Paris, France
ORION funding source(s)
This work was supported by grants from the French Ministry of Research, University of Paris Diderot–Sorbonne Paris Cité, French National Institute for Blood Transfusion (INTS), French Institute for Health and Medical Research (INSERM). This study was also supported by grant from Laboratory of Excellence GR-Ex, reference ANR-11-LABX-0051. The labex GR-Ex is funded by the program Investissements d’avenir of the French National Research Agency, reference ANR-11-IDEX-0005-02. AdB also acknowledges the Indo-French Centre for the Promotion of Advanced Research/CEFIPRA for collaborative grants (number 5302-2).

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