orthAgogue protocols

orthAgogue specifications

Information


Unique identifier OMICS_01691
Name orthAgogue
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for orthAgogue

orthAgogue IN pipeline

2018
PMCID: 5765558
PMID: 29319806
DOI: 10.1093/gbe/evx271

[…] terms of protein diversity was analyzed and visualized in a distance tree. therefore, to identify homologous proteins shared between the genomes, an all-against-all blastp was performed, after which orthagogue v1.0.3 (ekseth et al. 2014) and mcl 14-137 (van dongen 2000) were used to identify orthologous groups of proteins (ogps), where the ogps included proteins with both orthologous […]

orthAgogue institution(s)
Semantic Systems Biology Group, Department of Biology, Norwegian University of Science and Technology (NTNU), Trondheim, Norway

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