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OrthoAlign specifications


Unique identifier OMICS_28047
Name OrthoAlign
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Maintained Yes




No version available


  • person_outline Dia El-Mabrouk

Publication for OrthoAlign

OrthoAlign citations


Comparison of an Accelerometer Based Portable Navigation System, Patient Specific Instrumentation, and Conventional Instrumentation for Femoral Alignment in Total Knee Arthroplasty

PMCID: 5718798
PMID: 29172387
DOI: 10.5792/ksrr.17.032

[…] lant alignment with the use of a large-console CAS and addressed several potential problems associated with large initial start-up costs, pin site locations, and large consoles–. The KneeAlign2 (KA2; OrthoAlign Inc., Alisco Viejo, CA, USA) system is an accelerometer-based, portable, navigation device for TKA that combines the alignment accuracy of a large-console CAS with ease of use and convenien […]


SMORE: Synteny Modulator of Repetitive Elements

PMCID: 5745555
PMID: 29088079
DOI: 10.3390/life7040042

[…] nsistent. The reconciliation of pairwise alignments with duplication into a common multiple alignment with duplication is an as-yet-unresolved problem. An alternative approach is to use tools such as OrthoAlign [], which also include genome rearrangements.The SMORE pipeline sets the state for large-scale quantitative investigations into the evolution of multicopy gene families. In particular, it p […]


Orthologs, turn over, and remolding of tRNAs in primates and fruit flies

BMC Genomics
PMCID: 4981973
PMID: 27515907
DOI: 10.1186/s12864-016-2927-4

[…] ation-loss alignment problem that allows copying of subclusters of arbitrary size is APX hard [], but a practicable dynamic programming heuristic is available []. Recently, it was extended further in OrthoAlign to include also genome rearrangements []. In principle these approaches could be substituted into our workflow. We are content here with the simpler list alignment method, Fig. , despite it […]


The Combination of the Tunnel View and Weight Bearing Anteroposterior Radiographs Improves the Detection of Knee Arthritis

PMCID: 4746274
PMID: 26925264
DOI: 10.1155/2016/9786924

[…] The authors declare that there is no conflict of interests regarding the publication of this paper. Dr. Macaulay reports being a paid consultant and having stock options in OrthoAlign as well as being a board member of Arthritis and Rheumatism, Clinical Orthopaedics and Related Research, Journal of Arthroplasty, AAOS: Hip Fractures in Elderly Patients Guidelines, America […]


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OrthoAlign institution(s)
Département d’informatique et de recherche opérationelle (DIRO), Université de Montréal, Montreal, QC, Canada; Département de biochimie, Université de Montréal, Montreal, QC, Canada
OrthoAlign funding source(s)
Supported by “Fonds de recherche du Quebec-Nature et technologies” (FRQNT) and the Natural Sciences and Engineering Research Council of Canada (NSERC).

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