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OrthoDB

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Provides orthologs, genes inherited by extant species from a single gene in their last common ancestor. OrthoDB includes a total of 5756 species, providing ortholog groups for the clades of: 3663 bacteria, 330 metazoans, 227 fungi, 345 archaea and 1157 viruses. Among the metazoans, there are 172 vertebrates and 133 arthropods. There are 290 orthology levels, that were retrieved from the NCBI Taxonomy. The web resource presenting the OrthoDB data enables identified user sessions to analyze custom data sets in the context of the available orthology data, as well as to generate publication quality comparative genomics reports.

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OrthoDB classification

OrthoDB specifications

Restrictions to use:
None
Data access:
File download, Browse
Version:
9.1
Maintained:
Yes
Community driven:
No
User data submission:
Not allowed
Content license:
CC Attribution

OrthoDB support

Documentation

Credits

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Publications

Institution(s)

Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland; Swiss Institute of Bioinformatics, Geneva, Switzerland

Funding source(s)

This work was supported by the Swiss Institute of Bioinformatics SER funding, as well as in part benefitted from the University of Geneva funding, and the Swiss National Science Foundation funding 31003A_143936.

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