OrthoFiller specifications


Unique identifier OMICS_14808
Name OrthoFiller
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Bedtools Suite, OrthoFinder, R, Gamlss, Augustus, Hmmer
Maintained Yes



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  • person_outline Steven Kelly <>

Publication for OrthoFiller

OrthoFiller in publication

PMCID: 5860199
PMID: 28968857
DOI: 10.1093/bioinformatics/btx542

[…] researchers leverage ortholog calls to improving the coverage of their assemblies, as klaas vandepoele illustrated with the plaza comparative genomics platform (), another such application being orthofiller (http://biorxiv.org/content/early/2017/01/05/098566). there are increasing needs for plant-specific resources both for ecology and for advancing crop science, with major commercial actors […]

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OrthoFiller institution(s)
Department of Plant Sciences, University of Oxford, Oxford, UK
OrthoFiller funding source(s)
This work was supported by the European Union’s 451 Horizon 2020 research and innovation programme under grant agreement number 637765 and an EPSRC studentship through EP/G03706X/1.

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