OrthoFinder specifications


Unique identifier OMICS_09733
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data OrthoFinder takes as input a directory of FASTA files, one per species.
Output data It outputs a file containing the orthologous groups of genes from these species.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 0.2.7
Stability Stable
Requirements Scipy, BLAST+, The MCL graph clustering algorithm
Maintained Yes



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  • person_outline Steven Kelly <>

OrthoFinder article

OrthoFinder institution(s)
Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, UK

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