OrtholugeDB specifications
Information
| Unique identifier | OMICS_05345 |
|---|---|
| Name | OrtholugeDB |
| Restrictions to use | None |
| Maintained | Yes |
Publication for OrtholugeDB
library_books
OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis
2013 Nucleic Acids Res
PMCID: 3531125
PMID: 23203876
DOI: 10.1093/nar/gks1241
OrtholugeDB citations
(2)
library_books
A Novel Calcium Uptake Transporter of Uncharacterized P Type ATPase Family Supplies Calcium for Cell Surface Integrity in Mycobacterium smegmatis
2017
MBio
PMCID: 5615198
PMID: 28951477
DOI: 10.1128/mBio.01388-17
[…] Orthologs were predicted with OrtholugeDB () or by reciprocal best-hits method (). Multiple sequence alignments of the CtpE sequence from M. smegmatis and orthologous sequences from other species was done by ClustalW, and a phylog […]
library_books
Comparative Genomics and Transcriptional Analysis of Flavobacterium columnare Strain ATCC 49512
2017
Front Microbiol
PMCID: 5395568
PMID: 28469601
DOI: 10.3389/fmicb.2017.00588
[…] i and genomic rearrangements (Darling et al., ). PSORTdb (http://db.psort.org) version 3.0 was used to predict protein localization (Rey et al., ; Yu et al., ). Orthology analysis was conducted using OrtholugeDB (Whiteside et al., ) and Rast annotation server (Aziz et al., ; Overbeek et al., ).EDGAR was used to determine phylogenetic relationships between the Flavobacterium genomes and to calculat […]
OrtholugeDB institution(s)
Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada
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