OryGenesDB statistics

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OryGenesDB specifications


Unique identifier OMICS_04476
Name OryGenesDB
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes


  • Plants and Fungi
    • Oryza sativa

Publications for OryGenesDB

OryGenesDB citations


RiceMetaSys for salt and drought stress responsive genes in rice: a web interface for crop improvement

BMC Bioinformatics
PMCID: 5622590
PMID: 28964253
DOI: 10.1186/s12859-017-1846-y

[…] Array database (ROAD) [], RiceSRTFDB ([], http://www.nipgr.res.in/RiceSRTFDB.html ), Oryzabase ([], http://shigen.nig.ac.jp/rice/oryzabase/ ), QlicRice ([], http://nabg.iasri.res.in:8080/qlic-rice ), OryGenesDB ([], http://orygenesdb.cirad.fr/ ), RiceXPro ([], http://ricexpro.dna.affrc.go.jp/) and qTeller ([], http://qteller.com) and commercial platforms like Genevesigator and GeneMapper have been […]


Identification and expression profile analysis of NUniversity College of LondonEAR FACTOR Y families in Physcomitrella patens

Front Plant Sci
PMCID: 4541308
PMID: 26347760
DOI: 10.3389/fpls.2015.00642

[…] X software. The sequences of KfNF-Ys, AtNF-Ys and OsNF-Ys were gained from NCBI database (http://blast.ncbi.nlm.nih.gov/Blast.cgi), TAIR database (http://www.arabidopsis.org/) and Orygenes_DB (http://orygenesdb.cirad.fr/), respectively. […]


Construction of a rice glycoside hydrolase phylogenomic database and identification of targets for biofuel research

Front Plant Sci
PMCID: 3752443
PMID: 23986771
DOI: 10.3389/fpls.2013.00330

[…] T-DNA Insertion Sequence Database with T-DNA KO and Activation (AC) tagging lines (An et al., ; Jeong et al., ) for all the members of the GH families was gathered from the OryGeneDB database (http://orygenesdb.cirad.fr/tools.html) and integrated with the rice GH database.Gene expression information, comprised of digital northern data from available ESTs, MPSS tags and microarray platforms, was al […]


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OryGenesDB institution(s)
CIRAD Department BIOS UMR DAP, Montpellier, France

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