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Oscill8 specifications

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Unique identifier OMICS_21677
Name Oscill8
Alternative name Bifurcation2
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Windows
Programming languages C++
Computer skills Advanced
Stability Beta
Maintained Yes

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Oscill8 citations

 (19)
library_books

Chi3l3: a potential key orchestrator of eosinophil recruitment in meningitis induced by Angiostrongylus cantonensis

2018
PMCID: 5796390
PMID: 29391024
DOI: 10.1186/s12974-018-1071-2

[…] .6980, K2 = 0.5216, n1 = 2, n1 = 1, d1 = 0.1216, d2 = 0.4824, a = 0.0039, and b = 0.0235. The programming was performed in MATLAB R2007b (MathWorks, USA). The bifurcation analysis was performed using Oscill8 (http://oscill8.sourceforge.net). […]

call_split

Multiscale positive feedbacks contribute to unidirectional gastric disease progression induced by helicobacter pylori infection

2017
BMC Syst Biol
PMCID: 5700561
PMID: 29166909
DOI: 10.1186/s12918-017-0497-y
call_split See protocol

[…] Time series simulations and phase plane analyses were performed using XppAut ((http://www.math.pitt.edu/~bard/xpp/xpp.html). Bifurcation analysis was done using Oscill8 (http://oscill8.sourceforge.net/). All figures were plotted in MATLAB (https://mathworks.com/). […]

call_split

A dynamical framework for complex fractional killing

2017
Sci Rep
PMCID: 5556027
PMID: 28808338
DOI: 10.1038/s41598-017-07422-2
call_split See protocol

[…] d the positions of the apoptosis initiation threshold (as well as the BAXm inactivation threshold) were computed. Computations were done using XPPAUT (http://www.math.pitt.edu/~bard/xpp/xpp.html), or Oscill8 (http://oscill8.sourceforge.net/). All data was then plotted using MATLAB (https://mathworks.com/). […]

library_books

Realization of tristability in a multiplicatively coupled dual loop genetic network

2016
Sci Rep
PMCID: 4932522
PMID: 27378101
DOI: 10.1038/srep28096

[…] r values are not fixed; instead, we explore the properties of these systems over a wide parameter range. Numerical simulations are performed using MATLAB 2008b. Bifurcation diagrams are plotted using Oscill8. […]

library_books

Robustness of cell cycle control and flexible orders of signaling events

2015
Sci Rep
PMCID: 4588580
PMID: 26419873
DOI: 10.1038/srep14627

[…] With the original set of parameters and the new set of initial conditions, we used the program oscill8 to perform bifurcation analysis. […]

library_books

Modeling the interplay between the HIF 1 and p53 pathways in hypoxia

2015
Sci Rep
PMCID: 4561886
PMID: 26346319
DOI: 10.1038/srep13834

[…] s are determined such that the concentrations of proteins are dimensionless. For simplicity, we do not indicate the units of the parameters explicitly. The rate equations are numerically solved using Oscill8.The robustness of protein concentrations to parameter variations is also analyzed, and the results are presented in . The sensitivity of steady-state levels of and p53pac to parameter variati […]

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