OsiriX

[…] ( ). the cc was traced on the mid-sagittal slice and five adjacent slices in each hemisphere using open source invesalius 3 ( http://www.cti.gov.br/invesalius/, rrid: scr_014693). alternatively, osirix 8.0.1 software ( http://www.osirix-viewer.com/, rrid: scr_013618) may also be used. in some cases, data is obtained as a nifti-1file with the extension .nii; these files may also be used. […]

[…] and manual tools [,] including both commercial and open source software: mimics (materialise, belgium), simpleware scanip (synopsis, uk), vmtklab (orobix, italy), itk-snap (www.itksnap.org []) and osirix (pixmeo, switzerland). three-dimensional anatomical volumes of the blood pool were created from the 3d whole-heart mr sequences and from ct in order to represent the region of interest […]

[…] base. late gadolinium enhancement (lge) images in the slice locations described above were acquired 10–15 min after iv gd‐dtpa and assessed for lge., mri images, in dicom format, were processed with osirix (rosset et al. ) software. the end‐diastolic and end systolic phases were identified on a slice‐by‐slice basis and both the endocardial and epicardial borders were traced. the lv end systolic […]

[…] and/or clinical follow-up is needed in order to calculate accuracy diagnostic values., image analysis was performed using a general electric aw 4.6 platform (hp workstation and linux os) and osirix v6.5.2 (os x el capitan)., tumour to background ratio signal from the same lesions in both 68ga-psma and 11c-choline studies were analysed using the student paired t-test. comparisons […]

[…] mris at the mid l4 vertebrae to standardize lumbar spine level across patients []., regions of interest (rois) for both the multifidus and erector spinae muscles were segmented bilaterally using osirix software []. two methods of identifying the posterior boundary of the regions of interest were used:method 1 – muscle roi definitions were based on fascial plane separation using the facet […]

[…] (aif), another roi was drawn in one of the iliac arteries (common or external) or femoral superficial artery visible (see fig. ) depending on the specific tumour position within the rectum using the osirix dicom viewer (pixmeo, geneva, switzerland). perfusion parameters were calculated employing the fast deconvolution algorithm using an in-house developed established perfusion plugin tool […]

[…] photoacoustic signals generated by a given laser pulse in a target at a 5-mm depth and 680-nm wavelength in a phantom were detected by all transducers. data were reconstructed and drawn in osirix after exporting the raw data in dicom format (pixmeo, switzerland). the experiments were performed three times with triplicate wells., adult sd rats (male, 160–200 g) were anesthetized […]