OSPREY specifications

Information


Unique identifier OMICS_10812
Name OSPREY
Alternative names Open Source Protein REdesign for You, cOSPREY (cloud Open Source Protein REdesign for You)
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A protonated protein structure.
Input format PDB
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, Python
Parallelization CUDA
License GNU Lesser General Public License version 2.1
Computer skills Advanced
Version 3.0
Stability Stable
Maintained Yes

Subtools


  • CATS
  • COMETS
  • DEEPer
  • Dynamic A*
  • EPIC
  • iMinDEE
  • K*
  • LUTE
  • PLUG
  • Protein:Protein Interactions

Download


Versioning


Add your version

Documentation


Maintainers


  • person_outline OSPREY <>
  • person_outline Bruce Donald <>
  • person_outline Mark Hallen <>

Additional information


The manual for the previous version can be consulted at: http://www.cs.duke.edu/donaldlab/software/osprey/osprey.2.2/OSPREY2.2.pdf The source code of the cloud version can be downloaded at: https://github.com/iiisthu/cOSPREY

Publications for Open Source Protein REdesign for You

OSPREY institution(s)
Department of Computer Science, Duke University, Durham, NC, USA; Department of Chemistry, Duke University, Durham, NC, USA; Toyota Technological Institute at Chicago, Chicago, IL, USA; Program in Computational Biology and Bioinformatics, Duke University Medical Center, Durham, NC, USA; Department of Biochemistry, Duke University Medical Center, Durham, NC, USA
OSPREY funding source(s)
Supported by the NIH (grants R01 GM-78031 and R01 GM-118543), NSF (Graduate Research Fellowship), PhRMA Foundation (Informatics Predoctoral Fellowships), and the Liebmann Foundation (fellowship).

OSPREY review

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ostrokach

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Desktop
Promising alternative to Rosetta with a liberal license.