OTFBS protocols

OTFBS specifications

Information


Unique identifier OMICS_09261
Name OTFBS
Alternative name Over-represented Transcription Factor Binding Site Prediction Tool
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Zhirong Sun <>

Publication for Over-represented Transcription Factor Binding Site Prediction Tool

OTFBS IN pipelines

 (2)
2011
PMCID: 3040129
PMID: 21272326
DOI: 10.1186/1477-7827-9-14

[…] from motifscanner was sent to the software toucan [23] for determination of pwms that were significantly over-represented., over-represented transcription factor binding site prediction tool (otfbs). this web-tool [35,36] searches for potential tfbss based on the transfac pwms using the matinspector algorithm [37] and determines over-represented motifs in regulatory sequences., […]

2011
PMCID: 3040129
PMID: 21272326
DOI: 10.1186/1477-7827-9-14

[…] position-weigh matrices (pwms) [34]. the information of tfbs obtained from motifscanner was sent to the software toucan [23] for determination of pwms that were significantly over-represented., over-represented transcription factor binding site prediction tool (otfbs). this web-tool [35,36] searches for potential tfbss based on the transfac pwms using the matinspector algorithm [37] […]

OTFBS institution(s)
Institute of Bioinformatics, State Key Laboratory of Biomembrane and Membrane Biotechnology, MOE Key Laboratory of Bioinformatics, Department of Biological Sciences and Biotechnology, Tsinghua University, Beijing, China
OTFBS funding source(s)
This work was funded by the National Natural Science Grant in China (no. 19947006) and the National Key Foundation Research Grant in China (863).

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