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Other mathematical modeling tools

Surveillance
Desktop

Surveillance

Provides an assortment of statistical methods. Surveillance is a R package…

Provides an assortment of statistical methods. Surveillance is a R package which authorizes to model and monitor time series of counts and continuous-time point processes of epidemic phenomena, and…

cystiSim
Desktop

cystiSim

Supplies a method for Taenia solium control and transmission. cystiSim is a…

Supplies a method for Taenia solium control and transmission. cystiSim is a software allowing design of future program according to T. solium and its elimination as a public health problem. It…

SBSI
Desktop

SBSI Systems Biology Software Infrastructure

Affords a suite for model analysis and data integration. SBSI is composed of…

Affords a suite for model analysis and data integration. SBSI is composed of three major software: (i) SBSINumerics, containing a library with parallelized implementations of global optimization…

PyDREAM
Desktop

PyDREAM

Simplifies parameter inference for complex biological systems. PyDREAM is an…

Simplifies parameter inference for complex biological systems. PyDREAM is an open-source implementation of the DREAM(ZS) and MT-DREAM(ZS) sampling algorithms for efficient inference of complex,…

Fractional…
Desktop

Fractional Poisson–Nernst–Planck Model

Informs about ion permeation in gated ion channels. It assists in modeling,…

Informs about ion permeation in gated ion channels. It assists in modeling, analyzing and calculating biological phenomena. It contains a numerical algorithm for simulating the…

Bluetongue…
Desktop

Bluetongue model for forward prediction of disease spread

Provides a method for study bluetongue transmission within and between sheep…

Provides a method for study bluetongue transmission within and between sheep and cattle farms. Bluetongue model for forward prediction of disease spread is a flexible package which compiles data…

Epinet
Desktop

Epinet

Compiles a combination of epidemic/network-related tools. Epinet is a R package…

Compiles a combination of epidemic/network-related tools. Epinet is a R package that can generate contact networks to simulate the transmission of diseases. It includes features to perform bayesian…

EpiEstim
Desktop

EpiEstim

Offers a method for evaluate time-varying instantaneous reproduction numbers…

Offers a method for evaluate time-varying instantaneous reproduction numbers from incidence time series. EpiEstim is a R package that relies on knowledge of the serial interval distribution but is…

EpiDynamics
Desktop

EpiDynamics

Provides a R package which permits to simulate and plot deterministic and…

Provides a R package which permits to simulate and plot deterministic and stochastic models. EpiDynamics allows users to provide mathematical models for infectious diseases in both animals and humans.

EpiModel
Desktop

EpiModel

Offers a R package for procuring a way to construct, solve, and view…

Offers a R package for procuring a way to construct, solve, and view mathematical models related with infectious disease. EpiModel permits users to simulate epidemic models for both pedagogical and…

PAYAO
Web

PAYAO

Provides a web interface for annotating gene-regulatory and biochemical network…

Provides a web interface for annotating gene-regulatory and biochemical network models. PAYAO authorizes to share models which can be customized by inserting tags, comments and discussion by a whole…

APMonitor
Desktop

APMonitor Advanced Process Monitor

Permits users to optimize mixed-integer and differential algebraic equations.…

Permits users to optimize mixed-integer and differential algebraic equations. APMonitor is able to: (1) construct model, (2) fit parameters to data, (3) optimize over a future predictive horizon, and…

Epifit
Desktop

Epifit

Provides flexible model fitting for epidemiological data analysis models.…

Provides flexible model fitting for epidemiological data analysis models. Epifit intends to fit variety models such as Cox regression or linear models as well as some models which expressed…

Oscill8
Desktop

Oscill8

Enables analysis of large systems of ordinary differential equations (ODEs).…

Enables analysis of large systems of ordinary differential equations (ODEs). Oscill8 focuses on the working of high dimensional parameter space.

CL-SBML
Desktop

CL-SBML

Allows manipulation of System Biology Markup Language (SBML) Level 2 models.

Allows manipulation of System Biology Markup Language (SBML) Level 2 models.

SBW
Desktop

SBW

Allows communication between heterogeneous application components. SBW is a…

Allows communication between heterogeneous application components. SBW is a computational resource sharing framework that allows applications to communicate with each other efficiently and without…

ecellJ
Desktop

ecellJ

Allows manipulation of rules files of the system Ecell. ecellJ permits writing…

Allows manipulation of rules files of the system Ecell. ecellJ permits writing and reading of those files, as well as conversion between Ecell models and other formats, such as SBML. The software can…

SSCC TD Simulator
Desktop
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