Web app
iCar-PseCp iCar-PseCp

iCar-PseCp

Addresses the problem of the carbonylation identification for an…

Addresses the problem of the carbonylation identification for an uncharacterized protein sequence containing many residues of K, P, R, or T. iCar-PseCp incorporates the sequence-coupled information…

Desktop app
Prediction of… Prediction of Post-translational Modification…
HIstome HIstome

HIstome

A database of human histones, their post-translational modifications and…

A database of human histones, their post-translational modifications and modifying enzymes. The database covers 5 types of histones, 8 types of their post-translational modifications and 13 classes…

Desktop app
Topological Indices… Topological Indices to BioPolymers

TI2BioP Topological Indices to BioPolymers

A software uses for the calculation of spectral moments. TI2BioP is a tool that…

A software uses for the calculation of spectral moments. TI2BioP is a tool that combined homology-search methods with an alignment-free tool that uses protein four-color-maps. It allows mainly the…

Web app
Carboxylator Carboxylator

Carboxylator

Identifies carboxylated proteins with modification sites in order to…

Identifies carboxylated proteins with modification sites in order to investigate the biological functions of carboxylated proteins. Users can submit their uncharacterized protein sequences, then,…

PTMCurator PTMCurator

PTMCurator

An automated computational method for quantifying the number of each…

An automated computational method for quantifying the number of each post-translational modification reported experimentally and non-experimentally in the Swiss-Prot Knowledgebase. PTMCurator will…

Amino-acid Sequence… Amino-acid Sequence Annotation Prediction

ASAP Amino-acid Sequence Annotation Prediction

A universal machine learning (ML) framework for residue-level predictions. ASAP…

A universal machine learning (ML) framework for residue-level predictions. ASAP extracts efficiently and fast large set of window-based features from raw sequences. The platform also supports easy…

Web app
CleavePred CleavePred

CleavePred

A web tool for predicting the cleavage sites of proproteins such as prohormones…

A web tool for predicting the cleavage sites of proproteins such as prohormones and neuropeptides. CleavePred's algorithm is powered by ASAP, a Machine-Learning framework for predicting local…

Terminus Oriented… Terminus Oriented Protein Function Inferred…

TopFIND Terminus Oriented Protein Function Inferred Database

Provides a central, user-friendly knowledgebase that integrates data on protein…

Provides a central, user-friendly knowledgebase that integrates data on protein termini, their modifications and information on underlying proteolytic processes extracted from existing valuable…

Desktop app
Post-translational… Post-translational modification Enrichment…
Web app
SysPTM SysPTM

SysPTM

Provides a systematic and sophisticated platform for proteomic PTM research,…

Provides a systematic and sophisticated platform for proteomic PTM research, equipped not only with a knowledge base of manually curated multi-type modification data, but also with four fully…

Desktop app
CarSPred CarSPred

CarSPred

It could be used to identify carbonylation sites of query human protein…

It could be used to identify carbonylation sites of query human protein sequences. CarSPred consists of four modules which are devoted to K, R, T and P carbonylation site prediction separately. It…

ProteomeScout ProteomeScout

ProteomeScout

A resource for the study of proteins and their post-translational modifications…

A resource for the study of proteins and their post-translational modifications (PTMs) consisting of a database of PTMs, a repository for experimental data, an analysis suite for PTM experiments, and…

Desktop app
PyTMs PyTMs

PyTMs

A plugin implemented with the commonly used visualization software PyMOL. PyTMs…

A plugin implemented with the commonly used visualization software PyMOL. PyTMs enables users to introduce a set of common post-translational modifications (PTMs) into protein/peptide models and can…

Desktop app
Web app
GSTPred GSTPred

GSTPred

A web-server specially trained for the Glutathione S-transferase protein. The…

A web-server specially trained for the Glutathione S-transferase protein. The prediction is based on the basis of amino acid composition, dipeptide composition, tripeptide composition by using…

Desktop app
Web app
Intein Splice Site… Intein Splice Site Prediction

ISSPred Intein Splice Site Prediction

Protein splicing is a recently discovered Post-translational Modification in…

Protein splicing is a recently discovered Post-translational Modification in which one internal fragment, termed intein (Protein introns), is excised from a precursor protein and the flanking…

Web app
PeptideMap PeptideMap

PeptideMap

A tool for finding modifications on polypeptide sequences. The modifications…

A tool for finding modifications on polypeptide sequences. The modifications can be affecting single amino acids (e.g. phosphorylation or oxidation) or cross-linking two amino acids (e.g. disulfide…

topPTM topPTM

topPTM

A database that integrates experimentally verified post-translational…

A database that integrates experimentally verified post-translational modifications (PTMs) from available databases and research articles, and annotates the PTM sites on transmembrane proteins with…

Post Translational… Post Translational Modification Structural…
Web app
NetCorona NetCorona

NetCorona

Prediction of Coronavirus 3CL Proteinase cleavage sites on amino acid sequences.

Prediction of Coronavirus 3CL Proteinase cleavage sites on amino acid sequences.

Web app
NetPicoRNA NetPicoRNA

NetPicoRNA

Produces neural network predictions of cleavage sites of picornaviral proteases.

Produces neural network predictions of cleavage sites of picornaviral proteases.

Web app
ProP ProP

ProP

Predicts arginine and lysine propeptide cleavage sites in eukaryotic protein…

Predicts arginine and lysine propeptide cleavage sites in eukaryotic protein sequences using an ensemble of neural networks.

Web app
The Sulfinator The Sulfinator

The Sulfinator

Predicts tyrosine sulfation sites in protein sequences.

Predicts tyrosine sulfation sites in protein sequences.

DSDBASE DSDBASE

DSDBASE

A database on disulphide bonds in proteins that provides information on native…

A database on disulphide bonds in proteins that provides information on native disulphides and those which are stereochemically possible between pairs of residues in a protein.

PTMfunc PTMfunc

PTMfunc

A repository of functional predictions for protein post-translational…

A repository of functional predictions for protein post-translational modifications (PTMs).

dbPTM dbPTM

dbPTM

An integrated resource for post-translational modifications (PTMs), providing…

An integrated resource for post-translational modifications (PTMs), providing not only a comprehensive dataset of experimentally verified PTMs that are supported by the literature but also an…

RESID RESID

RESID

A comprehensive collection of annotations and structures for protein…

A comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.

Web app
NGOME NGOME

NGOME

An algorithm for the prediction of spontaneous non-enzymatic deamidation of…

An algorithm for the prediction of spontaneous non-enzymatic deamidation of internal asparagine residues in proteins. Asparagine deamidation is modulated by protein local sequence, secondary…

Web app
CYSREDOX CYSREDOX

CYSREDOX

Predicting the redox state of cysteins in proteins from multiple sequence…

Predicting the redox state of cysteins in proteins from multiple sequence alignments.

Web app
Motifs tree Motifs tree

Motifs tree

Predictors for initiator methionine cleavage (IMC) and Nα-terminal acetylation…

Predictors for initiator methionine cleavage (IMC) and Nα-terminal acetylation (N-Ac).

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