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Other tools (MS-based metabolomic analysis)

Uncategorized programs for MS-based metabolomic analysis.

W4M
Desktop

W4M Workflow4Metabolomics

Permits comprehensive metabolomics data pre-processing, statistical analysis…

Permits comprehensive metabolomics data pre-processing, statistical analysis and interpretation. W4M includes computational modules for data normalization, multivariate analysis and annotation. It…

KomicMarket
Dataset

KomicMarket Kazusa Omics Data Market

Compiles metabolite annotations. KomicMarket is a database of annotations of…

Compiles metabolite annotations. KomicMarket is a database of annotations of metabolite peaks that were detected by mass spectrometers (MSs) in metabolomics studies. Data were obtained with…

metaX
Web
Desktop

metaX

Can end-to-end metabolomics data analysis through a set of interchangeable…

Can end-to-end metabolomics data analysis through a set of interchangeable modules. metaX automates analysis of untargeted metabolomics data acquired from Liquide chromatography coupled mass…

MetCCS…
Web

MetCCS Predictor

Predicts collision cross-section (CCS) values of metabolites in a quickly way.…

Predicts collision cross-section (CCS) values of metabolites in a quickly way. MetCCS Predictor can be used for small chemical compounds like drugs, pesticides, nature products and so on, which may…

MaConDa
Dataset

MaConDa Mass spectrometry Contaminant Database

Gathers information about mass spectrometry (MS) contaminants. MaConDa is a…

Gathers information about mass spectrometry (MS) contaminants. MaConDa is a manually curated database which compiles theoretical and/or experimental data for over 200 records extracted from…

MetiTree
Desktop

MetiTree Metabolite Identification Tree

Identifies metabolites from multi-stage mass spectrometry (MSn) data. MetiTree…

Identifies metabolites from multi-stage mass spectrometry (MSn) data. MetiTree aims to assist in designation of chemical compounds by providing a set of tools for compute, visualize, compare and…

BISSCat
Dataset

BISSCat Biochemical Substructure Search Catalogue

Serves for molecular modelling studies and QSAR analysis. BISSCat is an online…

Serves for molecular modelling studies and QSAR analysis. BISSCat is an online resource containing a lot of functional groups (over 400), compounds (more than 200 000), and computationally…

Credential…
Desktop

Credential Features

A powerful platform to discriminate biological features from the various noise…

A powerful platform to discriminate biological features from the various noise sources prevalent in untargeted metabolomic data. The process is experimentally straightforward and can be easily…

Metabomxtr
Desktop

Metabomxtr

Developed to facilitate mixture-model analysis of non-targeted metabolomics…

Developed to facilitate mixture-model analysis of non-targeted metabolomics data in which only a portion of samples have quantifiable abundance for certain metabolites.

Polymerix
Desktop

Polymerix

Allows analysis of copolymer and homopolymer composition. Polymerix is a…

Allows analysis of copolymer and homopolymer composition. Polymerix is a program permitting to study copolymer mixtures and deconvolution of homopolymer. This tool can find two sequential…

BiGGR
Desktop

BiGGR

Provides an interface to simulate metabolic reconstruction from the BiGG…

Provides an interface to simulate metabolic reconstruction from the BiGG database and other metabolic reconstruction databases. BiGGR facilitates flux balance analysis (FBA) and the sampling of…

RMassBank
Desktop

RMassBank

Processes tandem MS files and builds MassBank records. RMassBank’s functions…

Processes tandem MS files and builds MassBank records. RMassBank’s functions include automated extraction of tandem MS spectra, formula assignment to tandem MS fragments, recalibration of tandem MS…

MS-MS Fragment…
Dataset

MS-MS Fragment Viewer

Provides a visualization tool of tandem mass-spectrometry (MS-MS) Fragment.…

Provides a visualization tool of tandem mass-spectrometry (MS-MS) Fragment. MS-MS Fragment Viewer is a database for metabolomics which consists of the FT-MS, IT- and FT-MS/MS spectral data with…

NOREVA
Web

NOREVA

Normalizes mass spectrometry (MS)-based metabolomics data. NOREVA could conduct…

Normalizes mass spectrometry (MS)-based metabolomics data. NOREVA could conduct normalization using 24 different methods, and provided evaluation report by collectively considering 5 different…

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