OTUCLUST specifications


Unique identifier OMICS_19111
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format FASTA
Output data A tab-delimited file where each row contains the sequence identifiers assigned to the cluster and a file containing the representative sequence for each OTU.
Output format TXT, FASTA
Operating system Unix/Linux
Computer skills Advanced
Version 0.1
Stability Stable
Maintained Yes


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  • person_outline Jenya Kopylov <>

Publication for OTUCLUST

OTUCLUST institution(s)
Department of Pediatrics, UCSD School of Medicine, La Jolla, CA, USA; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, USA; Laboratoire d'Ecologie Alpine (LECA), CNRS UMR 5553, Universite Grenoble Alpes, Grenoble, France; Department of Ecology, University of Kaiserslautern, Kaiserslautern, Germany; Department of Environmental Health, State Key Laboratory of Organ Failure Research, Guangdong Provincial Key Laboratory of Tropical Disease Research, School of Public Health and Tropical Medicine, Southern Medical University, Guangzhou, China; Department of Informatics, University of Oslo, Oslo, Norway; Department of Microbiology, Oslo University Hospital, Rikshospitalet, Oslo, Norway; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
OTUCLUST funding source(s)
Supported by HHS National Institutes of Health (NIH) under grant number 1S10OD012300, Deutsche Forschungsgemeinschaft (DFG) under grant number DU1319/1-1, the Howard Hughes Medical Institute and the Alfred P. Sloan Foundation.

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