OutLyzer specifications

Information


Unique identifier OMICS_25108
Name OutLyzer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format BAM
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements
SAMTOOLS, scpiy, numpy, subprocess, multiprocessing
Maintained Yes

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Documentation


Maintainer


  • person_outline Laurent Castera <>

Publication for OutLyzer

OutLyzer in publication

PMCID: 5852328
PMID: 29552334
DOI: 10.1016/j.csbj.2018.01.003

[…] and vardict, accept single sample as input (). in addition, several algorithms are dedicated to perform single-sample variant calling. these algorithms include snvmix2, shearwater, splinter, snver, outlyzer, pisces, isown, somvarius, and sinvict , , , , , , , , and fall into two categories., snvmix2, shearwater, splinter, snver, outlyzer, and pisces report all variants without distinguishing […]


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OutLyzer institution(s)
Department of Cancer Biology and Genetics, CCC François Baclesse, Genomic and Personalized Medicine in Cancer and Neurological Disorders Unit, Caen, France; Inserm U1079, Genomic and Personalized Medicine in Cancer and Neurological Disorders Unit, Rouen, France; Genetic Department, Rouen University Hospital, Genomic and Personalized Medicine in Cancer and Neurological Disorders Unit, Rouen, France; Rouen University, Rouen, France; Caen University, Caen, France
OutLyzer funding source(s)
Supported by the Institut National du Cancer (INCa).

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