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- Software type:
- Restrictions to use:
- Biological technology:
- Programming languages:
- R (≥ 3.2.2)
- Command line interface
- Output data:
- The output is a user-friendly array containing estimates of 5C, 5mC, and 5hmC for each CpG on the array.
- Operating system:
- Unix/Linux, Mac OS, Windows
- Computer skills:
- Source code URL:
(Houseman et al., 2016) OxyBS: estimation of 5-methylcytosine and 5-hydroxymethylcytosine from tandem-treated oxidative bisulfite and bisulfite DNA. Bioinformatics.
- Documentation: https://cran.r-project.org/web/packages/OxyBS/OxyBS.pdf
- Andres Houseman <Andres.Houseman at oregonstate.edu>
School of Biological and Population Health Sciences, College of Public Health and Human Sciences, Oregon State University, Corvallis, OR, USA; Department of Pharmacology and Toxicology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA; Department of Epidemiology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA
This work has been supported by the National Institutes of Health [grant numbers R01 MH094609, P20GM104416/8189].
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