P.R.E.S.S. statistics

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Citations per year

Number of citations per year for the bioinformatics software tool P.R.E.S.S.

Tool usage distribution map

This map represents all the scientific publications referring to P.R.E.S.S. per scientific context
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P.R.E.S.S. specifications


Unique identifier OMICS_27172
Name P.R.E.S.S.
Alternative names Protein Residue-Level Structural Statistics, PRESS
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Medium
Version 2.0
Stability Stable
Maintained Yes




No version available



  • person_outline Yuanyuan Huang
  • person_outline Steve Bonett
  • person_outline Andrzej Klockowski
  • person_outline Robert Jernigan

Publication for Protein Residue-Level Structural Statistics

P.R.E.S.S. citations


MiRImpact, a new bioinformatic method using complete microRNA expression profiles to assess their overall influence on the activity of intracellular molecular pathways

PMCID: 4845938
PMID: 27027999
DOI: 10.1080/15384101.2016.1147633

[…] s defined, which depends on the functional role of this gene product in a pathway: A R R i , p = { − 1 , − 0.5 , 0 , 0.5 , 1 , r e p r e s s o r r e p r e s s o r > a c t i v a t o r n e i t h e r a c t i v a t o r > r e p r e s s o r a c t i v a t o r This is also important to ide […]


Circulating adhesion molecules and arterial stiffness

PMCID: 4392209
PMID: 25784313
DOI: 10.5830/CVJA-2014-060

[…] ed.Aortic distensibility index (cm-2 dyn-1 10-6) =   2   × ( s y s t o l i c   d i a m e t e r   - d i a s t o l i c   d i a m e t e r ) d i a s t o l i c   d i a m e t e r   × ( p u l s e   p r e s s u r e ) T h e   a o r t i c   s t i f f n e s s   i n d e x   β =   1 n ( S B P D B P ) ( A o S   - A o D ) / A o D All venous samples were collected in the morning after a […]


Gene expression and fractionation resistance

BMC Genomics
PMCID: 4239561
PMID: 25573431
DOI: 10.1186/1471-2164-15-S6-S19

[…] sets of F and C. P B ( F ) = N u m b e r o f g e n e s i n b i n B f r o m F / ∑ B ′ n u m b e r o f g e n e s i n F E ( F , C ) = A v e r a g e E x p r e s s i o n [ G e n e s o f H o m o l o g y S e t i n ( F , C ) ] […]


Translational regulation of Anopheles gambiae mRNAs in the midgut during Plasmodium falciparum infection

BMC Genomics
PMCID: 3443010
PMID: 22857387
DOI: 10.1186/1471-2164-13-366

[…] s from a matching NP pool. To quantify the translational status of individual mRNA species, we define the relative PS loading (PL) as the extent of mRNA association with polysomes: (1) P L = E x p r e s s i o n l e v e l i n P S E x p r e s s i o n l e v e l i n N P + E x p r e s s i o n l e v e l i n P S PL values were compared between the mosquitoes fed on P. falciparum-infe […]


The importance of colonization pressure in multiresistant Acinetobacter baumannii acquisition in a Greek intensive care unit

PMCID: 3580657
PMID: 22694969
DOI: 10.1186/cc11383

[…] per week were monitored, and weekly colonization pressure created by all (imported and acquired) A. baumannii carriers was calculated, as described by Merrer et al. []: C o l o n i z a t i o n   p r e s s u r e = number of (admitted + acquired)carriers' patient - days in the week before acquisition × 100 total number of patient - days in the week before acquisition Samples for […]


Apoptosis inhibition or inflammation: the role of NAIP protein expression in Hodgkin and non Hodgkin lymphomas compared to non neoplastic lymph node

PMCID: 3297494
PMID: 22357131
DOI: 10.1186/1476-9255-9-4

[…] els in green and red plane of selected cells was computed by following ratio formula: R a t i o = Mean of pixels intensity for a cell in green plane ( i n d i c a t e d   N A I P   e x p r e s s i o n ) M e a n   o f   p i x e l s   i n t e n s i t y   f o r   t h e   s a m e   c e l l   i n   r e d   p l a n e   ( i n d i c a t e d   G A P D H   e x p r e s s i o n ) […]

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P.R.E.S.S. institution(s)
Program on Bioinformatics and Computational Biology, Department of Mathematics, Iowa State University, Ames, IA, USA; Summer REU Program on Computational Systems Biology, Iowa State University, Ames, IA, USA; Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA, USA
P.R.E.S.S. funding source(s)
Supported by the NIH//NIGMS grant R01GM081680 and by the NSF-DMS grant DMS0914354.

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