P.R.E.S.S. statistics

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Citations per year

Number of citations per year for the bioinformatics software tool P.R.E.S.S.
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Tool usage distribution map

This map represents all the scientific publications referring to P.R.E.S.S. per scientific context
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P.R.E.S.S. specifications

Information


Unique identifier OMICS_27172
Name P.R.E.S.S.
Alternative names Protein Residue-Level Structural Statistics, PRESS
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Medium
Version 2.0
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Yuanyuan Huang
  • person_outline Steve Bonett
  • person_outline Andrzej Klockowski
  • person_outline Robert Jernigan

Publication for Protein Residue-Level Structural Statistics

P.R.E.S.S. citations

 (17)
library_books

MiRImpact, a new bioinformatic method using complete microRNA expression profiles to assess their overall influence on the activity of intracellular molecular pathways

2016
PMCID: 4845938
PMID: 27027999
DOI: 10.1080/15384101.2016.1147633

[…] s defined, which depends on the functional role of this gene product in a pathway: A R R i , p = { − 1 , − 0.5 , 0 , 0.5 , 1 , r e p r e s s o r r e p r e s s o r > a c t i v a t o r n e i t h e r a c t i v a t o r > r e p r e s s o r a c t i v a t o r This is also important to ide […]

library_books

Circulating adhesion molecules and arterial stiffness

2015
PMCID: 4392209
PMID: 25784313
DOI: 10.5830/CVJA-2014-060

[…] ed.Aortic distensibility index (cm-2 dyn-1 10-6) =   2   × ( s y s t o l i c   d i a m e t e r   - d i a s t o l i c   d i a m e t e r ) d i a s t o l i c   d i a m e t e r   × ( p u l s e   p r e s s u r e ) T h e   a o r t i c   s t i f f n e s s   i n d e x   β =   1 n ( S B P D B P ) ( A o S   - A o D ) / A o D All venous samples were collected in the morning after a […]

library_books

Gene expression and fractionation resistance

2014
BMC Genomics
PMCID: 4239561
PMID: 25573431
DOI: 10.1186/1471-2164-15-S6-S19

[…] sets of F and C. P B ( F ) = N u m b e r o f g e n e s i n b i n B f r o m F / ∑ B ′ n u m b e r o f g e n e s i n F E ( F , C ) = A v e r a g e E x p r e s s i o n [ G e n e s o f H o m o l o g y S e t i n ( F , C ) ] […]

library_books

Translational regulation of Anopheles gambiae mRNAs in the midgut during Plasmodium falciparum infection

2012
BMC Genomics
PMCID: 3443010
PMID: 22857387
DOI: 10.1186/1471-2164-13-366

[…] s from a matching NP pool. To quantify the translational status of individual mRNA species, we define the relative PS loading (PL) as the extent of mRNA association with polysomes: (1) P L = E x p r e s s i o n l e v e l i n P S E x p r e s s i o n l e v e l i n N P + E x p r e s s i o n l e v e l i n P S PL values were compared between the mosquitoes fed on P. falciparum-infe […]

library_books

The importance of colonization pressure in multiresistant Acinetobacter baumannii acquisition in a Greek intensive care unit

2012
PMCID: 3580657
PMID: 22694969
DOI: 10.1186/cc11383

[…] per week were monitored, and weekly colonization pressure created by all (imported and acquired) A. baumannii carriers was calculated, as described by Merrer et al. []: C o l o n i z a t i o n   p r e s s u r e = number of (admitted + acquired)carriers' patient - days in the week before acquisition × 100 total number of patient - days in the week before acquisition Samples for […]

library_books

Apoptosis inhibition or inflammation: the role of NAIP protein expression in Hodgkin and non Hodgkin lymphomas compared to non neoplastic lymph node

2012
PMCID: 3297494
PMID: 22357131
DOI: 10.1186/1476-9255-9-4

[…] els in green and red plane of selected cells was computed by following ratio formula: R a t i o = Mean of pixels intensity for a cell in green plane ( i n d i c a t e d   N A I P   e x p r e s s i o n ) M e a n   o f   p i x e l s   i n t e n s i t y   f o r   t h e   s a m e   c e l l   i n   r e d   p l a n e   ( i n d i c a t e d   G A P D H   e x p r e s s i o n ) […]


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P.R.E.S.S. institution(s)
Program on Bioinformatics and Computational Biology, Department of Mathematics, Iowa State University, Ames, IA, USA; Summer REU Program on Computational Systems Biology, Iowa State University, Ames, IA, USA; Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA, USA
P.R.E.S.S. funding source(s)
Supported by the NIH//NIGMS grant R01GM081680 and by the NSF-DMS grant DMS0914354.

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