P_RNA_scaffolder specifications
Information
| Unique identifier | OMICS_27432 |
|---|---|
| Name | P_RNA_scaffolder |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Input format | SAM |
| Output format | FASTA |
| Biological technology | Illumina |
| Operating system | Unix/Linux |
| Programming languages | C++, Perl, Shell (Bash) |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
Versioning
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Maintainer
- person_outline Jiong-Tang Li <>
Additional information
http://www.fishbrowser.org/software/P_RNA_scaffolder/index.php/Home/Index/Documentation.html
Publication for P_RNA_scaffolder
library_books
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads.
2018 BMC Genomics
PMCID: 5834899
PMID: 29499650
DOI: 10.1186/s12864-018-4567-3
P_RNA_scaffolder institution(s)
Key Laboratory of Aquatic Genomics, Ministry of Agriculture, CAFS Key Laboratory of Aquatic Genomics and Beijing Key Laboratory of Fishery Biotechnology, Chinese Academy of Fishery Sciences, Beijing, China; College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, China; College of Marine Science, Zhejiang Ocean University, Zhoushan, China
P_RNA_scaffolder funding source(s)
Supported by the National Natural Science Foundation of China (31402353 and 31672644) and the Special Scientific Research Funds for Central Non-profit Institutes, Chinese Academy of Fishery Sciences (2014C010).
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