Protocols

P2TF specifications

Information


Unique identifier OMICS_06262
Name P2TF
Alternative name Predicted Prokaryotic Transcription Factors
Restrictions to use None
Maintained Yes

Publication for Predicted Prokaryotic Transcription Factors

P2TF citations

 (2)
library_books

Transcriptional changes when Myxococcus xanthus preys on Escherichia coli suggest myxobacterial predators are constitutively toxic but regulate their feeding

2018
Microb Genom
PMCID: 5857379
PMID: 29345219
DOI: 10.1099/mgen.0.000152

[…] equence. Also included were genomic islands as predicted by Island Viewer 3.0 [], secondary metabolite gene clusters as predicted by antiSMASH 4.0 [], and signalling proteins as predicted by P2CS and P2TF []. […]

call_split

Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria

2013
BMC Genomics
PMCID: 3616900
PMID: 23398941
DOI: 10.1186/1471-2164-14-94
call_split See protocol

[…] Thirty complete genomes of Lactobacillales (Additional file ) were downloaded from MicrobesOnline database []. Primary TF sets for each studied genome were extracted from P2TF (http://www.p2tf.org) database. Sigma factors and RNA binding proteins were excluded from the collections. Groups of orthologs were pre-counted as following. Initially, groups of orthologous prot […]

P2TF institution(s)
CEA, DSV, IBEB, SBVME, LEMiRE, Saint-Paul-lez-Durance, France

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