P3BSseq statistics

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P3BSseq specifications

Information


Unique identifier OMICS_13143
Name P3BSseq
Alternative name Parallel Processing Pipeline for analysis of Bisulfite Sequencing data
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A reference genome
Input format FASTQ
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Version 2.1
Stability Beta
Maintained Yes

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Publication for Parallel Processing Pipeline for analysis of Bisulfite Sequencing data

P3BSseq in publication

PMCID: 5727985
PMID: 29233090
DOI: 10.1186/s12864-017-4353-7

[…] that are aligned to each genomic region., to assess the degree of dna methylation of each cpg, we used our parallel processing pipeline software for automatic analysis of bisulfite sequencing data (p3bsseq) []. we define a cpg as 100% methylated when all the reads that are aligned to this cpg in a genomic region are 100% methylated (the reads in the cpg loci are of the form cpg rather than tpg […]


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P3BSseq institution(s)
Computational Biology and Bioinformatics, Max Planck Institute for Molecular Biomedicine, Münster, Germany; Computational Biology and Systems Biomedicine, Biodonostia Health Research Institute, San Sebastián, Spain; Department of Cell and Developmental Biology, Max Planck Institute for Molecular Biomedicine, Münster, Germany; Medical Faculty, University of Münster, Germany; IKERBASQUE, Basque Foundation for Science, Bilbao, Spain
P3BSseq funding source(s)
This work was supported by grants DFG15/14 and DFG15/020 from Diputación Foral de Gipuzkoa, and grant II14/00016 from I+D+I National Plan 2013–2016 and FEDER funds.

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