P53retriever specifications

Information


Unique identifier OMICS_21958
Name P53retriever
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An arbitrary DNA sequence.
Output data A table containing information about the identified Res.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License MIT License
Computer skills Advanced
Version 1.2.0
Stability Stable
Maintained Yes

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Versioning


No version available

Documentation


Maintainers


  • person_outline Toma Tebaldi
  • person_outline Alberto Inga

Publication for P53retriever

P53retriever citation

library_books

p53 Specifically Binds Triplex DNA In Vitro and in Cells

2016
PLoS One
PMCID: 5131957
PMID: 27907175
DOI: 10.1371/journal.pone.0167439

[…] e identified as closely (<21bp) located pairs of sequence motifs with a maximum of 1 mismatch. The set of identified p53CON sites was expanded to include all full-length grade 3–5 sites identified by p53retriever R/Bioconductor package [], which largely overlapped the original set. The identification of potential triplex-forming sequences was carried out using the R/bioconductor program triplex-1. […]

P53retriever institution(s)
Centre for Integrative Biology (CIBIO), University of Trento, Mattarello, Italy
P53retriever funding source(s)
Partially supported by the Italian Association for Cancer Research, AIRC (IG grant 12869).

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