PacmonSTR specifications


Unique identifier OMICS_05208
Name PacmonSTR
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data An alignment file (alignment of long reads with the reference, such as, hg19) and a reference Tandem Repeat table.
Biological technology Pacific Biosciences
Operating system Unix/Linux
Programming languages Python, Shell (Bash)
Computer skills Advanced
Stability Stable
Blasr, Cython, Scikit-learn
Maintained Yes



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  • person_outline Ali Bashir <>
  • person_outline Ajay Ummat <>

Publication for PacmonSTR

PacmonSTR institution(s)
Department of Genetics and Genomic Science and Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA
PacmonSTR funding source(s)
Supported by the Icahn School of Medicine at Mount Sinai.

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