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Number of citations per year for the bioinformatics software tool PADA

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PADA specifications


Unique identifier OMICS_20245
Alternative names PAthway Dynamics Approximator, PADA-GPU
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.0.1
Stability Stable
Maintained Yes




No version available


  • person_outline P. Thiagarajan

Publication for PAthway Dynamics Approximator

PADA citation


A Computational and Experimental Study of the Regulatory Mechanisms of the Complement System

PLoS Comput Biol
PMCID: 3024260
PMID: 21283780
DOI: 10.1371/journal.pcbi.1001059
call_split See protocol

[…] ctories by the predefined intervals and computing the conditional probabilities by simple counting. Our implementation of this scheme is available at our website ( It is a Java program that can read SBML files and generate parallelized code for construction process to be executed on clusters.A DBN, being a special kind of Bayesian network, encodes a large […]

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PADA institution(s)
Department of Computer Science, National University of Singapore, Singapore, Singapore
PADA funding source(s)
Partially supported by the Singapore Ministry of Education (MoE) grant T1 251RES0917.

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