Protocols

PADA specifications

Information


Unique identifier OMICS_20245
Name PADA
Alternative names PAthway Dynamics Approximator, PADA-GPU
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.0.1
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline P. Thiagarajan

Publication for PAthway Dynamics Approximator

PADA citation

call_split

A Computational and Experimental Study of the Regulatory Mechanisms of the Complement System

2011
PLoS Comput Biol
PMCID: 3024260
PMID: 21283780
DOI: 10.1371/journal.pcbi.1001059
call_split See protocol

[…] ctories by the predefined intervals and computing the conditional probabilities by simple counting. Our implementation of this scheme is available at our website (http://www.comp.nus.edu.sg/~rpsysbio/pada). It is a Java program that can read SBML files and generate parallelized code for construction process to be executed on clusters.A DBN, being a special kind of Bayesian network, encodes a large […]

PADA institution(s)
Department of Computer Science, National University of Singapore, Singapore, Singapore
PADA funding source(s)
Partially supported by the Singapore Ministry of Education (MoE) grant T1 251RES0917.

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