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PAGI specifications

Information


Unique identifier OMICS_10083
Name PAGI
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0
Stability No
Requirements
igraph
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Information


Unique identifier OMICS_10083
Name PAGI
Interface Web user interface
Restrictions to use None
Programming languages R
Computer skills Basic
Version 1.0
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for PAGI

PAGI citation

library_books

Bayesian model of signal rewiring reveals mechanisms of gene dysregulation in acquired drug resistance in breast cancer

2017
PMCID: 5348014
PMID: 28288164
DOI: 10.1371/journal.pone.0173331

[…] in egfr tyrosine kinase inhibitors. our approach predicted literature-supported dysregulated pathways complementary to both node-centric (spia, david, and gather) and edge-centric (esea and pagi) methods. moreover, by proposing a novel pattern of aberrant signaling called v-structures, we observed that genes were dysregulated in resistant-vs-sensitive conditions when they were involved […]


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