PAINTOR specifications

Information


Unique identifier OMICS_11039
Name PAINTOR
Alternative name Probabilistic Annotation INtegraTOR
Software type Framework/Library
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data PAINTOR takes as input the following data for each set of SNPs at a locus: (i) summary association statistics (Z-scores); linkage disequilibrium matrix/matrices (pairwise Pearson correlations coefficients between each SNP) and (iii) functional annotation matrix (binary indicator of annotation membership).
Output data The main output of PAINTOR is a probability for each variant to be causal that can be used for selection of SNPs to be tested for biological causality in functional assays.
Operating system Unix/Linux
Computer skills Advanced
Version 2.1
Stability Stable
Requirements Eigen, Nlopt
Source code URL https://codeload.github.com/gkichaev/PAINTOR_V2.1/zip/master
Maintained Yes

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Maintainer


  • person_outline Bogdan Pasaniuc <>

Publications for Probabilistic Annotation INtegraTOR

PAINTOR institution(s)
Bioinformatics Interdepartmental Program, University of California, Los Angeles, Los Angeles, CA, USA; Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA; Department of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
PAINTOR funding source(s)
This research was supported by NIH grants R01-HG006399, R01-GM53275, and R21-CA182821.

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