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PRICE | Software for the targeted assembly of components of (Meta) genomic sequence data

A software for the targeted de novo assembly of genomic sequence from large-scale genomic or metagenomic datasets. PRICE is designed with paired-end data in mind but does not require such data. The features of the underlying software system can be used through two executables: 1) the full assembler, PriceTI, or 2) an executable for independently filtering read data prior to assembly, PriceSeqFilter.

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PRICE classification

PRICE specifications

Unique identifier:
Software type:
Restrictions to use:
Input format:
fasta, fastq, priceq
Operating system:
Unix/Linux, Mac OS
Computer skills:
Paired-Read Iterative Contig Extension
Command line interface
Input data:
Complex metagenomic data
Output format:
FASTA, priceq
Programming languages:

PRICE distribution


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PRICE support



  • J. Graham Ruby <>


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Department of Biochemistry and Biophysics, University of California, San Francisco, CA, USA; GW Hooper Foundation Laboratories, University of California, San Francisco, CA, USA; Howard Hughes Medical Institute, Chevy Chase, MD, USA

Funding source(s)

Funded by the Howard Hughes Medical Institute.

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