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Pairoscope specifications

Information


Unique identifier OMICS_05105
Name Pairoscope
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format BAM
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.4.2
Stability Stable
Requirements
Samtools C library, cmake, Cairo
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Li Ding <>

Additional information


https://sourceforge.net/projects/pairoscope

Pairoscope citations

 (2)
library_books

Visualizing multidimensional cancer genomics data

2013
PMCID: 3706894
PMID: 23363777
DOI: 10.1186/gm413

[…] []. many other tools also perform specific tasks, exploiting the genomic coordinates representation scheme. for example, putative translocation events can be verified by the command-line tool pairoscope [], which generates relational diagrams of paired-end sequencing reads to aid in the discovery of translocation events. to view and analyze single nucleotide polymorphism (snp) […]

library_books

Genome Remodeling in a Basal like Breast Cancer Metastasis and Xenograft

2010
PMCID: 2872544
PMID: 20393555
DOI: 10.1038/nature08989

[…] in mecr was only identified, assembled, and validated in the metastasis, suggesting its de novo nature in this sample., of the 112 assembled putative translocations, 34 passed manual review using pairoscope graphs (unpublished), and 19 with an assembly score greater than our experimentally-supported cutoff of 10 were included in . seven translocations were experimentally validated (). one […]


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