Pairoscope specifications

Information


Unique identifier OMICS_05105
Name Pairoscope
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format BAM
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.4.2
Stability Stable
Requirements
Samtools C library, cmake, Cairo
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Li Ding

Additional information


https://sourceforge.net/projects/pairoscope

Pairoscope citation

library_books

Visualizing multidimensional cancer genomics data

2013
Genome Med
PMCID: 3706894
PMID: 23363777
DOI: 10.1186/gm413

[…] Gremlin []. Many other tools also perform specific tasks, exploiting the genomic coordinates representation scheme. For example, putative translocation events can be verified by the command-line tool Pairoscope [], which generates relational diagrams of paired-end sequencing reads to aid in the discovery of translocation events. To view and analyze single nucleotide polymorphism (SNP) and comparat […]

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