PAIRPred specifications

Information


Unique identifier OMICS_19032
Name PAIRPred
Alternative name Partner Aware Interacting Residue PREDictor
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A protein sequence.
Input format FASTA, PDB
Output data A text file.
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Source code URL http://combi.cs.colostate.edu/supplements/pairpred/PAIRPred.zip
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Fayyaz-ul-Amir Afsar Minhas

Publication for Partner Aware Interacting Residue PREDictor

PAIRPred citation

library_books

Progress and challenges in predicting protein interfaces

2015
Brief Bioinform
PMCID: 4719070
PMID: 25971595
DOI: 10.1093/bib/bbv027

[…] that is being computed for training and testing is complemented by partner-specific features such as propensities and electrostatic complementarity [, , ]. The most recent method in this category is PAIRpred []. Application of these methods is seen in re-ranking docked decoys based on similarity to the predicted interface [, , , ].Another type of approach uses protein–protein docking (E) to gener […]

PAIRPred institution(s)
Department of Computer Science Colorado State University Fort Collins, CO, USA; Department of Microbiology, Immunology and Pathology Colorado State University Fort Collins, CO, USA; Department of Computer Science Colorado State University Fort Collins, CO, USA
PAIRPred funding source(s)
Supported by a grant from the Fulbright scholarship program of the U.S. State Department and the Higher Education Commission (HEC) of Pakistan, and by NIH (NIAID) grant U54 AI065357.

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