PairProSVM specifications


Unique identifier OMICS_09972
Name PairProSVM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Man-Wai Mak <>

Publication for PairProSVM

PairProSVM in publication

PMCID: 3289086
PMID: 22166017
DOI: 10.1186/1477-5956-9-S1-S8

[…] [], an unknown protein sequence is aligned with every training sequences (with known subcellular locations) to create a feature vector for classification. mak et al. [] proposed a predictor called pairprosvm that uses profile alignment to detect weak similarity between protein sequences. given a query sequence, a profile is obtained from psi-blast search []. the profile is then aligned […]

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PairProSVM institution(s)
Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, Hong Kong

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