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|Alternative name||Phylogeny and ALIgnment of homologous protein structures|
|Restrictions to use||None|
|User data submission||Not allowed|
Publication for Phylogeny and ALIgnment of homologous protein structures
DoSA: Database of Structural Alignments
[…] Improved structure-based sequence alignments: Improved pairwise alignments of homologous protein domains from Phylogeny and ALIgnment of homologous protein structures (PALI v2.7) () with their corresponding PB sequence alignments are available in DoSA. The improved structure-based sequence alignments and thei […]
Improved Detection of Remote Homologues Using Cascade PSI BLAST: Influence of Neighbouring Protein Families on Sequence Coverage
[…] All sequence searches were performed using PALI (Phylogeny and Alignment of homologous protein structures) database which is an information resource of proteins of known three dimensional structures and their homologous sequences . Earlier rigorous […]
Accuracy of structure based sequence alignment of automatic methods
[…] Alignments; HOMSTRAD, HOMologous STRucture Alignment Database; MMDB, Molecular Modelling DataBase; OXBench, benchmark for evaluation of protein multiple sequence alignment accuracy; PALI, database of Phylogeny and ALIgnment of homologous protein structures; PASS2, Protein Alignments organised as Structural Superfamilies (version 2); Pfam, multiple sequence alignments and HMM-profiles of protein do […]
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