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PALI specifications

Information


Unique identifier OMICS_22838
Name PALI
Alternative name Phylogeny and ALIgnment of homologous protein structures
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

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Publication for Phylogeny and ALIgnment of homologous protein structures

PALI citations

 (3)
library_books

DoSA: Database of Structural Alignments

2013
PMCID: 3708618
PMID: 23846594
DOI: 10.1093/database/bat048

[…] Improved structure-based sequence alignments: Improved pairwise alignments of homologous protein domains from Phylogeny and ALIgnment of homologous protein structures (PALI v2.7) () with their corresponding PB sequence alignments are available in DoSA. The improved structure-based sequence alignments and thei […]

library_books

Improved Detection of Remote Homologues Using Cascade PSI BLAST: Influence of Neighbouring Protein Families on Sequence Coverage

2013
PLoS One
PMCID: 3577913
PMID: 23437136
DOI: 10.1371/journal.pone.0056449

[…] All sequence searches were performed using PALI (Phylogeny and Alignment of homologous protein structures) database which is an information resource of proteins of known three dimensional structures and their homologous sequences . Earlier rigorous […]

library_books

Accuracy of structure based sequence alignment of automatic methods

2007
BMC Bioinformatics
PMCID: 2039753
PMID: 17883866
DOI: 10.1186/1471-2105-8-355

[…] Alignments; HOMSTRAD, HOMologous STRucture Alignment Database; MMDB, Molecular Modelling DataBase; OXBench, benchmark for evaluation of protein multiple sequence alignment accuracy; PALI, database of Phylogeny and ALIgnment of homologous protein structures; PASS2, Protein Alignments organised as Structural Superfamilies (version 2); Pfam, multiple sequence alignments and HMM-profiles of protein do […]

Citations

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PALI institution(s)
Molecular Biophysics Unit, Indian Institute of Science, Bangalore, India; Department of Biotechnology, Indian Institute of Technology, Kharagpur, India
PALI funding source(s)
Supported by Council of Scientific and Industrial Research, India and The Wellcome Trust, UK.

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