PalmComparomics

Contains the main results of the exploitation of the comparison of a target species (coconut) and a reference species (oil palm) for improving transcriptomic resources. PalmComparomics is a web a resource that also offers several tools for data querying and visual analyses. It provides a BLAST tool allowing the user to align sequences against the coconut polypeptides and contigs. Users retrieve data, including polypeptides and proteins products, gene ontology annotations, and Interpro or Pfam domains of coconut polypeptides.

PalmComparomics specifications

Dataset

Information

Unique identifier	OMICS_21728
Name	PalmComparomics
Restrictions to use	None
Database management system	MySQL
Community driven	No
Data access	File download, Browse
User data submission	Not allowed
Maintained	Yes

Maintainer

Luc Baudouin

Publication for PalmComparomics

Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut

2017 PLoS One

PMCID: 5363918

PMID: 28334050

DOI: 10.1371/journal.pone.0173300

PalmComparomics institution(s)

Montpellier SupAgro, UMR AGAP, Montpellier, France; CIRAD, UMR AGAP, Montpellier, France; South Green Bioinformatics Platform, Montpellier, France

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