Palmitoylation site prediction software tools | Post-translational modification analysis

Identification of palmitoylated proteins with their sites is the foundation for understanding molecular mechanisms and regulatory roles of palmitoylation. Contrasting to the labor-intensive and time-consuming experimental approaches, in silico…
CSS-Palm
Desktop
Web

CSS-Palm Clustering and Scoring Strategy for Palmitoylation sites prediction

A computer program for palmitoylation site prediction. By comparison with…

A computer program for palmitoylation site prediction. By comparison with previous versions, the performance of CSS-Palm 4.0 was greatly improved. Finally, the standalone version of CSS-Palm 4.0 was…

IFS-Palm
Desktop

IFS-Palm

A software tool for predicting palmitoylation sites based on the amino acid…

A software tool for predicting palmitoylation sites based on the amino acid sequence features. The core of IFS-Palm is that the amino acid factors, conservation, disorder feature as well as specific…

NBA-Palm
Web

NBA-Palm

A computational method based on naive Bayes algorithm for prediction of…

A computational method based on naive Bayes algorithm for prediction of palmitoylation site. The training data is curated from scientific literature (PubMed) and includes 245 palmitoylated sites from…

CKSAAP-Palm
Desktop

CKSAAP-Palm

A tool for predicting palmitoylation sites based on protein sequence. For a…

A tool for predicting palmitoylation sites based on protein sequence. For a sequence segment in a given protein, the encoding scheme based on the composition of k-spaced amino acid pairs (CKSAAP) is…

WAP-Palm
Web

WAP-Palm

A web tool for identifying protein palmitoylation sites based on weight amino…

A web tool for identifying protein palmitoylation sites based on weight amino acid composition, auto-correlation functions and position specific scoring matrix profiles. WAP-Palm achieves a Matthews…

PalmPred
Desktop
Web

PalmPred

A predictor to identify palmitoylation sites from protein sequence information…

A predictor to identify palmitoylation sites from protein sequence information using a support vector machine model. The best performance of PalmPred was obtained by incorporating sequence…

PPWMs
Desktop

PPWMs

A computational predictor using position weight matrices (PWMs) encoding scheme…

A computational predictor using position weight matrices (PWMs) encoding scheme and support vector machine (SVM) for identifying protein palmitoylation sites. PPWMs shows a predictive performance…

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