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PalmPred specifications

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Unique identifier OMICS_10050
Name PalmPred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Protein sequence
Input format FASTA
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

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No version available

Maintainer


This tool is not available anymore.

Information


Unique identifier OMICS_10050
Name PalmPred
Interface Web user interface
Restrictions to use None
Input data Protein sequence
Input format FASTA
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for PalmPred

PalmPred citations

 (4)
library_books

Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase

2018
Sci Rep
PMCID: 5869587
PMID: 29588502
DOI: 10.1038/s41598-018-23575-0

[…] (see supplementary table ). s-palmitoylation was predicted using seqpalm (http://lishuyan.lzu.edu.cn/seqpalm/; ref.), the cksaap-palm programme (http://doc.aporc.org/wiki/cksaap-palm; ref.), palmpred (http://proteininformatics.org/mkumar/palmpred/index.html; ref.), gps-lipid, and wap-palm (http://bioinfo.ncu.edu.cn/wap-palm.aspx; ref.). cysteine residue within conserved functional […]

library_books

Dynamic alterations in decoy VEGF receptor 1 stability regulate angiogenesis

2017
Nat Commun
PMCID: 5467243
PMID: 28589930
DOI: 10.1038/ncomms15699

[…] dynamically regulates protein trafficking and turnover. thus, we hypothesized that palmitoylation regulates vegfr1 stability. since mvegfr1 has several potential palmitoylation sites based on palmpred palmitoylation and css palm 2.0 (ref. ) prediction algorithms, we determined effects of manipulating palmitoylation on baseline turnover of mvegfr1 by inhibiting palmitoylating enzymes […]

library_books

Effect of C Terminal S Palmitoylation on D2 Dopamine Receptor Trafficking and Stability

2015
PLoS One
PMCID: 4633242
PMID: 26535572
DOI: 10.1371/journal.pone.0140661

[…] site is of interest, since previous studies have shown that many gpcrs are palmitoylated in their c-terminal tails at the end of helix 8 [, , , ]. using the online palmitoylation predictor program, palmpred, c433 was the only cysteine predicted to be palmitoylated in the d2r polypeptide []., each cysteine mutant construct, as well as a wt-d2r cdna, was transiently transfected into hek-293t […]

library_books

Demonstration of the Coexistence of Duplicated LH Receptors in Teleosts, and Their Origin in Ancestral Actinopterygians

2015
PLoS One
PMCID: 4536197
PMID: 26271038
DOI: 10.1371/journal.pone.0135184

[…] fshr extracellular domain [–]. potential tyrosine sulfation sites were predicted by sulfosite browser with 80% prediction sensitivity [] and palmitoylation sites in the icd were predicted using palmpred browser []., seventy eight gonadotropin receptor sequences of representative vertebrates were collected from the available databases of ncbi and ensembl, including 33 sequences defined […]


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PalmPred institution(s)
Department of Biophysics, University of Delhi South Campus, New Delhi, India

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