PalmPred statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Palmitoylation site prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

PalmPred specifications

Information


Unique identifier OMICS_10050
Name PalmPred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Protein sequence
Input format FASTA
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

Versioning


Add your version

Maintainer


This tool is not available anymore.

Information


Unique identifier OMICS_10050
Name PalmPred
Interface Web user interface
Restrictions to use None
Input data Protein sequence
Input format FASTA
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for PalmPred

PalmPred in publications

 (4)
PMCID: 5869587
PMID: 29588502
DOI: 10.1038/s41598-018-23575-0

[…] (see supplementary table ). s-palmitoylation was predicted using seqpalm (http://lishuyan.lzu.edu.cn/seqpalm/; ref.), the cksaap-palm programme (http://doc.aporc.org/wiki/cksaap-palm; ref.), palmpred (http://proteininformatics.org/mkumar/palmpred/index.html; ref.), gps-lipid, and wap-palm (http://bioinfo.ncu.edu.cn/wap-palm.aspx; ref.). cysteine residue within conserved functional […]

PMCID: 5467243
PMID: 28589930
DOI: 10.1038/ncomms15699

[…] dynamically regulates protein trafficking and turnover. thus, we hypothesized that palmitoylation regulates vegfr1 stability. since mvegfr1 has several potential palmitoylation sites based on palmpred palmitoylation and css palm 2.0 (ref. ) prediction algorithms, we determined effects of manipulating palmitoylation on baseline turnover of mvegfr1 by inhibiting palmitoylating enzymes […]

PMCID: 4633242
PMID: 26535572
DOI: 10.1371/journal.pone.0140661

[…] site is of interest, since previous studies have shown that many gpcrs are palmitoylated in their c-terminal tails at the end of helix 8 [, , , ]. using the online palmitoylation predictor program, palmpred, c433 was the only cysteine predicted to be palmitoylated in the d2r polypeptide []., each cysteine mutant construct, as well as a wt-d2r cdna, was transiently transfected into hek-293t […]

PMCID: 4536197
PMID: 26271038
DOI: 10.1371/journal.pone.0135184

[…] fshr extracellular domain [–]. potential tyrosine sulfation sites were predicted by sulfosite browser with 80% prediction sensitivity [] and palmitoylation sites in the icd were predicted using palmpred browser []., seventy eight gonadotropin receptor sequences of representative vertebrates were collected from the available databases of ncbi and ensembl, including 33 sequences defined […]


To access a full list of publications, you will need to upgrade to our premium service.

PalmPred institution(s)
Department of Biophysics, University of Delhi South Campus, New Delhi, India

PalmPred reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PalmPred