PanArray specifications


Unique identifier OMICS_29112
Name PanArray
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Adam Phillippy
  • person_outline Steven Salzberg
  • person_outline Xiangyu Deng
  • person_outline Wei Zhang

Publication for PanArray

PanArray citation


Probing the pan genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification

BMC Genomics
PMCID: 2996996
PMID: 20846431
DOI: 10.1186/1471-2164-11-500

[…] ous pan-genome microarrays that targeted either the conserved sequence of gene families with low probe density or no coverage of the intergenic regions, we utilized a novel probe selection algorithm (PanArray) to design a pan-genome tiling array that incorporates the genomes of 20 available L. monocytogenes strains []. This design provides unbiased coverage of the pan-genome, and also superior acc […]

PanArray institution(s)
Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA; National Center for Food Safety and Technology, Illinois Institute of Technology, Summit, IL, USA
PanArray funding source(s)
Supported in part by the US Department of Homeland Security Science and Technology Directorate under award NBCH2070002.

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